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  • [Ann Nucl Med.] Customized FreeSurfer-based brain atlas for diffeomorphic anatomical registration through exponentiated lie algebra tool.

    2020년 06월호
    [Ann Nucl Med.] Customized FreeSurfer-based brain atlas for diffeomorphic anatomical registration through exponentiated lie algebra tool.

    연세의대 / 백민석, 유영훈*, 류철형*

  • 출처
    Ann Nucl Med.
  • 등재일
    2020 Apr
  • 저널이슈번호
    34(4):280-288. doi: 10.1007/s12149-020-01445-y. Epub 2020 Feb 22.
  • 내용

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    Abstract
    OBJECTIVE:
    Digital brain template and atlas designed for a specific group provide advantages for the analysis and interpretation of neuroimaging data, but require a significant workload for development. We developed a simple method to create customized brain atlas for diffeomorphic anatomical registration through exponentiated lie algebra (DARTEL) tool using FreeSurfer-generated volume-of-interest (FSVOI) images and validated.

    METHODS:
    18F-florbetaben positron emission tomography (PET) and magnetic resonance (MR) imaging data were obtained from 248 participants of Alzheimer's disease spectrum (from cognitively normal to Alzheimer's disease dementia). To create a customized atlas, MR images of 84 amyloid-negative controls were first processed with FreeSurfer to obtain individual FSVOI and with DARTEL tool to create DARTEL template. Individual FSVOI images were spatially normalized, and each voxel was then labelled with a VOI label with maximum probability. Using these template and atlas, all images were normalized, and the regional standardized uptake value ratios (SUVR) were measured.

    RESULTS:
    18F-florbetaben SUVR values measured with customized atlas showed excellent one-to-one correlation with SUVR measured with individual FSVOI in all regions, and thereby showed almost identical between-group comparison results and outperformed the classic methods.

    CONCLUSIONS:
    Customized FreeSurfer-based brain atlas for DARTEL tool is easy to create and useful for the analysis of PET and MR images with high adaptability and reliability for broad research purposes.

     

     

     


    Author information

    Baek MS1, Cho H1, Ryu YH2, Lyoo CH3.
    1
    Department of Neurology, Gangnam Severance Hospital, Yonsei University College of Medicine, 20 Eonjuro 63-gil, Gangnam-gu, Seoul, Republic of Korea.
    2
    Department of Nuclear Medicine, Gangnam Severance Hospital, Yonsei University College of Medicine, 211 Eonjuro, Gangnam-gu, Seoul, Republic of Korea. ryuyh@yuhs.ac.
    3
    Department of Neurology, Gangnam Severance Hospital, Yonsei University College of Medicine, 20 Eonjuro 63-gil, Gangnam-gu, Seoul, Republic of Korea. lyoochel@yuhs.ac.

  • 키워드
    Atlas; DARTEL; FreeSurfer; Magnetic resonance imaging; Positron emission tomography; Template
  • 연구소개
    PET 영상 분석을 위해서는 digital brain template와 atlas가 필요하고 기존에 알려진 것들을 이용할 수도 있지만, 각 연구소마다 또 각 연구 목적에 맞는 template와 atlas를 따로 제작한다는 것은 매우 어려운 일이었다. 본 연구에서는 FreeSurfer를 이용하여 brain MRI의 뇌 영역을 분획하고 이를 DARTEL tool을 이용하여 정규화 시킨 다음 maximal probabilistic brain atlas를 만드는 방법을 제시했으며, 아밀로이드 PET 영상을 이용하여 그 정확도를 검증했다. 이 방법을 이용하면 매우 번거로운 수작업을 통한 뇌영역 분획 과정 없이도 연구자들은 연구 목적에 맞는 brain atlas를 손쉽게 제작할 수 있다.
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